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Via pip:

pip install pyCapsid

Via conda:

First, create a new virtual environment using conda and then activate it.

conda create -n pycapsid python=3.10 -y
conda activate pycapsid
conda install -c luque_lab -c conda-forge pycapsid

Visualization in jupyter lab

To install the necessary packages for visualizing the results in a jupyter notebook, Via pip:

pip install jupyterlab ipywidgets==7.7.2 nglview

Via conda:

conda install -c conda-forge jupyterlab ipywidgets==7.7.2 nglview

Visualization in ChimeraX

For higher quality visualization of the results you need to download and install ChimeraX. We reccomend ChimeraX 1.5

Site Last Updated: March 16, 2023